The Mouse SAGE Site: database of public mouse SAGE libraries
نویسندگان
چکیده
منابع مشابه
The Mouse SAGE Site: database of public mouse SAGE libraries
The Mouse SAGE Site is a web-based database of all available public libraries generated by the Serial Analysis of Gene Expression (SAGE) from various mouse tissues and cell lines. The database contains mouse SAGE libraries organized in a uniform way and provides web-based tools for browsing, comparing and searching SAGE data with reliable tag-to-gene identification. A modified approach based on...
متن کاملModeling and Analysis of SAGE Libraries
A Serial Analysis of Gene Expression (SAGE) library is a collection of thousands of small DNA “tags”, each of which represents a distinct mRNA transcript. Existing methods have been proposed for analyzing single library data (i.e., one library per group) or one tag at a time. The practice of lumping all libraries together (in a multi-library setting) to form a “mega” library for each group is o...
متن کاملPostnatal gene expression in the normal mouse cornea by SAGE.
PURPOSE To provide a detailed gene expression profile of the normal postnatal mouse cornea. METHODS Serial analysis of gene expression (SAGE) was performed on postnatal day (PN)9 and adult mouse (6 week) total corneas. The expression of selected genes was analyzed by in situ hybridization. RESULTS A total of 64,272 PN9 and 62,206 adult tags were sequenced. Mouse corneal transcriptomes are c...
متن کاملA human glomerular SAGE transcriptome database
BACKGROUND To facilitate in the identification of gene products important in regulating renal glomerular structure and function, we have produced an annotated transcriptome database for normal human glomeruli using the SAGE approach. DESCRIPTION The database contains 22,907 unique SAGE tag sequences, with a total tag count of 48,905. For each SAGE tag, the ratio of its frequency in glomeruli ...
متن کاملStatistical evaluation of SAGE libraries: consequences for experimental design.
Since the introduction of serial analysis of gene expression (SAGE) as a method to quantitatively analyze the differential expression of genes, several statistical tests have been published for the pairwise comparison of SAGE libraries. Testing the difference between the number of specific tags found in two SAGE libraries is hampered by the fact that each SAGE library is only one measurement: t...
متن کاملذخیره در منابع من
با ذخیره ی این منبع در منابع من، دسترسی به آن را برای استفاده های بعدی آسان تر کنید
ژورنال
عنوان ژورنال: Nucleic Acids Research
سال: 2004
ISSN: 1362-4962
DOI: 10.1093/nar/gkh058